Research

• N. Desai, E. Lusk, A. Cherry, T. Voran, "The Computer as Software Component: A Mechanism for Developing and Testing Resource Management Software", proceedings of IEEE Cluster 2007, Austin, Texas, 2007.
• J. Cope, M. Oberg, H. Tufo, T. Voran, M. Woitaszek, "High Throughput Grid Computing with an IBM Blue Gene/L", proceedings of IEEE Cluster 2007, Austin, Texas, 2007.
• J. Cope, T. Voran, M. Woitaszek, A. Boggs, S. McCreary, M. Oberg, H.M. Tufo, "Experiences Deploying a 10 Gigabit Ethernet Computing Environment to Support Regional Computational Science", proceedings of the 8th LCI International Conference on High-Performance Clustered Computing, South Lake Tahoe, California, 2007.
• A. Boggs, J. Cope, S. McCreary, M. Oberg, H.M. Tufo, T. Voran, and M. Woitaszek, "Improving Cluster Management with Scalable Filesystems", proceedings of the 7th LCI International Conference on Linux Clusters: The HPC Revolution, Norman, Oklahoma, April 2006.
• M. Oberg, H.M. Tufo, T. Voran, and M. Woitaszek, "Evaluation of RDMA Over Ethernet Technology for Building Cost Effective Linux Clusters", proceedings of the 7th LCI International Conference on Linux Clusters: The HPC Revolution, Norman, Oklahoma, April 2006.
• J. Cope, H. M. Tufo, and M. Woitaszek. "An Extensible Service Development Toolkit to Support Earth Science Grids", The 2nd IEEE International Conference on e-Science and Grid Computing, Amsterdam, The Netherlands, December 2006.
• P. Thornton, H.M. Tufo, N. Wilhelmi, M. Woitaszek, C. Hartsough, J. Cope. "Grid-BGC: a Grid-enabled research platform for high-resolution surface weather interpolation and biogeochemical process modeling", NASA Earth Science Technology Conference 2006, College Park, MD. June, 2006.
• E. R. Jessup, H. M. Tufo, and M. S. Woitaszek, "Building an HPC Watering Hole for Boulder Area Computational Science", Proceedings of the 5th International Conference on Computational Science (ICCS 2005), Atlanta, Georgia, May 2005.
• J. Cope, M. Oberg, H.M. Tufo, and M. Woitaszek, "Shared Parallel File Systems in Heterogeneous Linux Multi-Cluster Environments", proceedings of the 6th LCI International Conference on Linux Clusters: The HPC Revolution.
• J.M. Dennis, M. Levy, R.D. Nair, H.M. Tufo, and T. Voran, "Towards an Efficient and Scalable Discontinuous Galerkin Atmospheric Model", proceedings of the 19th IEEE International Parallel & Distributed Processing Symposium, 2005.
• G. Almasi, G. Bhanot, D. Chen, M. Eleftheriou, B. Fitch, A. Gara, R. Germain, M. Gupta, M.C. Pitman, A. Rayshubskiy, J. Sexton, F. Suits, P. Vranas, B. Walkup, T.J.C. Ward, Y. Zhestkov, A. Curioni, W. Curioni, C. Archer, J.E. Moreira, R. Loft, H.M. Tufo, T. Voran, K. Riley, "Early Experience with Scientific Applications on the BlueGene/L Supercomputer", Euro-Par 2005, Lisboa, Portugal, September 2005.
• J. Cope, C. Hartsough, P. Thornton, H. M. Tufo, N. Wilhelmi, and M. Woitaszek, "GridBGC: A Grid-Enabled Terrestrial Carbon Cycle Modeling System", Euro-Par 2005, Lisboa, Portugal, September 2005.
• J. Cope, C. Hartsough, S. McCreary, P. Thornton, H. M. Tufo, N. Wilhelmi, and M. Woitaszek, "Experiences from Simulating the Global Carbon Cycle in a Grid Computing Environment", The Fourteenth Global Grid Forum (GGF 14), Chicago, Illinois, June 2005.
• M. Woitaszek, M. Oberg, and H.M. Tufo, "Comparing Linux Clusters for the Community Climate Systems Model", proceedings of the 5th LCI International Conference on Linux Clusters: The HPC Revolution, 2004.
• M. Hamady, T. Cheung, H.M. Tufo, R. Knight, "Using Structural Properties to Predict Behavior of Related Proteins: Does Protein Structure Influence Trypsin Miscleavage?", IEEE Engineering in Medicine and Biology Magazine (http://emb-magazine.bme.uconn.edu/), to appear.
• E.R. Jessup and H.M. Tufo, "Creating a Sustainable High-Performance Scientific Computing Course", Lecture Notes in Computer Science, 3039, pp. 1242-1249, 2004.